AMP PNP top 10

AMP PNP (adenylyl-imidodiphosphate) is a non-hydrolyzable analog of ATP.

 

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AMP PNP (adenylyl-imidodiphosphate) is a non-hydrolyzable analog of ATP. AMP PNP can inhibit fast axonal transport and promote interactions between membranous organelles and microtubules [1]. AMP-PNP acts as a competitive inhibitor for most ATP-dependent systems, inhibiting a variety of ATP-hydrolyzing enzymes such as DNA topoisomerase II, SV40 large T antigen helicase, and several kinases. AMP PNP also blocks ATP-sensitive, calcium-dependent potassium channels [2-4]. AMP-PNP can be used for the preparation of nucleotide solutions [5], dual-polarization fluorescence detection, actin cytoskeleton preparation for flow cells [6], and cascade binding reactions [7]. However, AMP-PNP is highly unstable under acidic conditions and rapidly hydrolyzes into phosphamide and inorganic phosphate.

 

References:

[1]. Brady ST. A novel brain ATPase with properties expected for the fast axonal transport motor. Nature. 1985 Sep 5-11;317(6032):73-5. doi: 10.1038/317073a0. PMID: 2412134.

[2]. Hehl S, Neumcke B. KATP channels of mouse skeletal muscle: mechanism of channel blockage by AMP-PNP. Eur Biophys J. 1994;23(4):231-7. doi: 10.1007/BF00213573. PMID: 7805625.

[3]. Subramanian R, Gelles J. Two distinct modes of processive kinesin movement in mixtures of ATP and AMP-PNP. J Gen Physiol. 2007 Nov;130(5):445-55. doi: 10.1085/jgp.200709866. PMID: 17968024; PMCID: PMC2151671.

[4]. Lasek RJ, Brady ST. Attachment of transported vesicles to microtubules in axoplasm is facilitated by AMP-PNP. Nature. 1985 Aug 15-21;316(6029):645-7. doi: 10.1038/316645a0. PMID: 4033761.

[5]. Fendley GA, Urbatsch IL, et,al. Nucleotide dependence of the dimerization of ATP binding cassette nucleotide binding domains. Biochem Biophys Res Commun. 2016 Nov 11;480(2):268-272. doi: 10.1016/j.bbrc.2016.10.046. Epub 2016 Oct 17. PMID: 27765627.

[6]. DeBerg HA, Blehm BH, et,al. Motor domain phosphorylation modulates kinesin-1 transport. J Biol Chem. 2013 Nov 8;288(45):32612-32621. doi: 10.1074/jbc.M113.515510. Epub 2013 Sep 26. PMID: 24072715; PMCID: PMC3820893.

[7]. Jung C, Hawkins JA, et,al. Massively Parallel Biophysical Analysis of CRISPR-Cas Complexes on Next Generation Sequencing Chips. Cell. 2017 Jun 29;170(1):35-47.e13. doi: 10.1016/j.cell.2017.05.044. PMID: 28666121; PMCID: PMC5552236.

 

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